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Enabling Multimodal User Interactions for Genomics Visualization Creation

Published in IEEE Visualization and Visual Analytics (VIS), 2023

Recommended citation: Qianwen Wang∗, Xiao Liu∗, Man Qing Liang∗, Sehi L’Yi, and Nils Gehlenborg (Oct. 2023). “Enabling Multimodal User Interactions for Genomics Visualization Creation”. 2023 IEEE Visualization and Visual Analytics (VIS). IEEE. doi: 10.1109/vis54172.2023.00031. https://doi.ieeecomputersociety.org/10.1109/VIS54172.2023.00031

Discovering type I cis-AT polyketides through computational mass spectrometry and genome mining with Seq2PKS

Published in Nature Communications, 2024

Recommended citation: Donghui Yan, Muqing Zhou, Abhinav Adduri, Yihao Zhuang, Mustafa Guler, Sitong Liu, Hyonyoung Shin, Torin Kovach, Gloria Oh, Xiao Liu, Yuting Deng, Xiaofeng Wang, Liu Cao, David H. Sherman, Pamela J. Schultz, Roland D. Kersten, Jason A. Clement, Ashootosh Tripathi, Bahar Behsaz, and Hosein Mohimani (2024). “Discovering type I cis-AT polyketides through computational mass spectrometry and genome mining with Seq2PKS”. Nature Communications. https://doi.org/10.1038/s41467-024-49587-1

Characterization and clinical significance of the intra and inter-tumor spatial immune heterogeneity using 3-dimensional multiplexed phenotyping in non-small cell lung cancer

Published: November 04, 2023

Miguel Lopez de Rodas¹, Zachary Frohock², Xiao Liu³, Noelia Vilarino^1,4, Viviana Ahumada¹, Scott Gettinger¹, R Krishna Murthy Karuturi⁵, Joshy George³, Yi Li³ and Kurt Schalper¹

DNA bendability regulates transcription factor pioneer binding to nucleosomes

Published: December 06, 2023

Xiao Liu^1,2, Luca Mariani², Martha L Bulyk^2,3

Genomic sequence context and histone marks regulate pioneer binding to nucleosomes

Published: March 13, 2024

Luca Mariani¹, Xiao Liu^1,2, Kwangwoon Lee¹, Stephen S Gisselbrecht¹, Philip A Cole^1,3, Martha L Bulyk^1,4

21-120 Differential and Integral Calculus

Undergraduate, Carnegie Mellon Univeristy, Department of Mathematical Sciences, 2019

Teaching Assistant

17-214/514 Principles of Software Construction

Graduate, Carnegie Mellon Univeristy, School of Computer Science, 2021

Teaching Assistant

BMI713 Computing Skills for Biomedical Sciences

Graduate, Harvard Medical School, Department of Biomedical Informatics, 2023

Teaching Fellow

BMI715 Computational Statistics for Biomedical Sciences

Graduate, Harvard Medical School, Department of Biomedical Informatics, 2023

Teaching Fellow