Curriculum Vitae

Education

• Ph.D. in Computational Biology & Medicine, Tri-institutional Ph.D. Programs, 2024 - 2029 (expected)
  • Joint by Weil Cornell Medical School, Memorial Sloan Kettering Cancer Center, and the Rockefeller University.
• S.M. in Biomedical Informatics, Harvard Medical School, 2022 - 2024
• B.S. in Computer Science, Carnegie Mellon University, 2018 - 2022
  • With University Honors. Minor: Mathematical Sciences, SCS concentration in Computational Biology

Experience

• Bulyk Lab, Brigham and Women’s Hospital and Harvard Medical School, Jan. 2023 - Jun. 2024
  • Graduate Research Assistant
  • Supervisor: Dr. Martha Bulyk
• Computational Sciences, The Jackson Laboratory, May 2023 - Aug. 2023
  • Research Data Analyst Intern
  • Supervisor: Dr. Yi Li
• Gehlenborg Lab, Harvard Medical School, Sep. 2022 - May 2023
  • Graduate Research Assistant
  • Supervisor: Dr. Nils Gehlenborg
• Mohimani Lab, Carnegie Mellon University, Feb. 2021 - Dec. 2022
  • Undergraduate Research Assistant
  • Supervisor: Dr. Hosein Mohimani

Publications

Discovering type I cis-AT polyketides through computational mass spectrometry and genome mining with Seq2PKS

Donghui Yan, Muqing Zhou, Abhinav Adduri, Yihao Zhuang, Mustafa Guler, Sitong Liu, Hyonyoung Shin, Torin Kovach, Gloria Oh, Xiao Liu, Yuting Deng, Xiaofeng Wang, Liu Cao, David H. Sherman, Pamela J. Schultz, Roland D. Kersten, Jason A. Clement, Ashootosh Tripathi, Bahar Behsaz, and Hosein Mohimani (2024). “Discovering type I cis-AT polyketides through computational mass spectrometry and genome mining with Seq2PKS”. Nature Communications.

Enabling Multimodal User Interactions for Genomics Visualization Creation

Qianwen Wang∗, Xiao Liu∗, Man Qing Liang∗, Sehi L’Yi, and Nils Gehlenborg (Oct. 2023). “Enabling Multimodal User Interactions for Genomics Visualization Creation”. 2023 IEEE Visualization and Visual Analytics (VIS). IEEE. doi: 10.1109/vis54172.2023.00031.

Presentations

Genomic sequence context and histone marks regulate pioneer binding to nucleosomes

March 13, 2024

Talk at Cold Spring Harbor Laboratory, Systems Biology, Cold Spring Harbor, NY

DNA bendability regulates transcription factor pioneer binding to nucleosomes

December 06, 2023

Poster Presentation at Cold Spring Harbor Laboratory, Genome Informatics, Cold Spring Harbor, NY

Characterization and clinical significance of the intra and inter-tumor spatial immune heterogeneity using 3-dimensional multiplexed phenotyping in non-small cell lung cancer

November 04, 2023

Rapid Oral Abstract at 38th Society for Immunotherapy of Cancer, San Diego, CA

Teaching

BMI715 Computational Statistics for Biomedical Sciences

BMI713 Computing Skills for Biomedical Sciences

17-214/514 Principles of Software Construction

21-120 Differential and Integral Calculus